Phylogeny and inference: from models to data and back

Contribution List

1. Samuel Alizon - ABC phylodynamics

2/1/21, 2:00 PM

Afternoon

2. Rémi Monasson - Infer global, predict local: on the trade-off between statistical models and sequence data for protein fitness reconstruction

2/1/21, 2:30 PM

Afternoon

3. Stéphane Guindon - Bayesian phylogeography along a continuum: sampling its way in a random walk

2/1/21, 4:00 PM

Afternoon

4. Christophe Dessimoz - Laying foundations for very large scale comparative genomics

2/1/21, 4:30 PM

Afternoon

5. Tandy Warnow - New methods for large-scale species tree estimation addressing GDL

2/1/21, 5:00 PM

Afternoon

6. Katia Koelle - Tree-free phylodynamic inference for emerging viral pathogens and lineages

2/1/21, 5:30 PM

Afternoon

7. Chikara Furusawa - Toward prediction and control of microbial evolution: Analysis of phenotypic constraints in laboratory evolution

2/2/21, 9:00 AM

Morning

8. François Blanquart - Evolution of virulence in commensal bacteria: example of the High Pathogenicity Island in Escherichia coli

2/2/21, 9:30 AM

Morning

9. Guillaume Achaz - What process(es) explain(s) genetic diversity within species?

2/2/21, 10:00 AM

Morning

10. Alessandra Carbone - Inferring phylogeny and function from different sequence spaces

2/2/21, 4:00 PM

Afternoon

11. Daniel Weissman - Evolution in spatially structured populations

2/2/21, 4:30 PM

Afternoon

12. KC Huang - Bacterial evolution in complex environments

2/2/21, 5:00 PM

Afternoon

13. Chris Illingworth - Sequencing error and phylogenetics

2/2/21, 5:30 PM

Afternoon

14. Erik van Nimwegen - Recombination with complex population structure drives genome evolution in many bacterial species

2/3/21, 1:30 PM

Afternoon

15. Olivier Rivoire - Models of coevolution in proteins: sampling, physics and evolution

2/3/21, 2:00 PM

Afternoon

16. Clément Nizak - Parameters and determinants of responses to selection in antibody libraries

2/3/21, 2:30 PM

Afternoon

17. Samir Suweis - Constrained proteome allocation, adaptive strategies, and coexistence in models of competitive microbial communities

2/3/21, 4:00 PM

Afternoon

18. Simona Cocco - The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2

2/3/21, 4:30 PM

Afternoon

19. Ada Altieri - New perspectives on the emergence of multiple equilibria in large highly interacting ecosystems

2/3/21, 5:00 PM

Afternoon

20. Rosalind Allen - Modelling phenotypic delay in the evolution of bacterial antibiotic resistance

2/3/21, 5:30 PM

Afternoon

21. Amaury Lambert - The genomic view of diversification

2/4/21, 1:30 PM

Afternoon

22. Eduardo Rocha - Gene flow, innovation and the invention of microbial functions

2/4/21, 2:00 PM

Afternoon

23. Benny Chain - Capturing T cell receptor similarities

2/4/21, 2:30 PM

Afternoon

24. Martin Weigt - Wandering through sequence space

2/4/21, 4:00 PM

Afternoon

25. Michael Desai - Evolution as a stochastic algorithm

2/4/21, 4:30 PM

Afternoon

26. Alison Feder - Inferring spatially-embedded genealogies in expanding populations

2/4/21, 5:00 PM

Afternoon

27. Daniel Weinreich - A high-throughput approach to study epistasis in proteins

2/4/21, 5:30 PM

Afternoon

28. Joachim Krug - Evolutionary pathways to antibiotic resistance

2/5/21, 1:30 PM

Afternoon

29. Matteo Smerlak - The retrospective view of molecular evolution

2/5/21, 2:00 PM

Afternoon

30. Namiko Mitarai - Bacteria and Phage: Competition and Coexistence

2/5/21, 2:30 PM

Afternoon

31. Thierry Mora - Solitary waves in virus-host co-evolution

2/5/21, 4:00 PM

Afternoon

32. Marta Luksza - Cancer evolution and metastasis under immune selection

2/5/21, 4:30 PM

Afternoon

33. Sarah Cobey - Vaccination and adaptive evolution of SARS-CoV-2

2/5/21, 5:00 PM

Afternoon

34. Pedagogical tutorial by Martin Weigt: "1) aligning two sequences"; "2) sequence profiles and hidden Markov models"