Phylogeny and inference: from models to data and back

Feb 1, 2021, 9:00 AM → Feb 5, 2021, 7:00 PM Europe/Paris

Amphithéâtre Hermite (Institut Henri Poincaré)

Click here for the program

Organizers:
Anne-Florence Bitbol (EPFL)
Claude Loverdo (CNRS & Sorbonne Université)
Mikhail Tikhonov (Washington University St Louis)
Aleksandra Walczak (CNRS & ENS)

Monday, February 1

1:00 PM → 7:00 PM Afternoon

1:55 PM Introduction

2:00 PM Samuel Alizon - ABC phylodynamics

Recording

2:30 PM Rémi Monasson - Infer global, predict local: on the trade-off between statistical models and sequence data for protein fitness reconstruction

Recording

4:00 PM Stéphane Guindon - Bayesian phylogeography along a continuum: sampling its way in a random walk

Recording

4:30 PM Christophe Dessimoz - Laying foundations for very large scale comparative genomics

Recording

5:00 PM Tandy Warnow - New methods for large-scale species tree estimation addressing GDL

Recording

5:30 PM Katia Koelle - Tree-free phylodynamic inference for emerging viral pathogens and lineages

Recording

Tuesday, February 2

8:00 AM → 12:00 PM Morning

9:00 AM Chikara Furusawa - Toward prediction and control of microbial evolution: Analysis of phenotypic constraints in laboratory evolution

Recording

9:30 AM François Blanquart - Evolution of virulence in commensal bacteria: example of the High Pathogenicity Island in Escherichia coli

Recording

10:00 AM Guillaume Achaz - What process(es) explain(s) genetic diversity within species?

Recording

1:00 PM → 7:00 PM Afternoon

4:00 PM Alessandra Carbone - Inferring phylogeny and function from different sequence spaces

Recording

4:30 PM Daniel Weissman - Evolution in spatially structured populations

Recording

5:00 PM KC Huang - Bacterial evolution in complex environments

Recording

5:30 PM Chris Illingworth - Sequencing error and phylogenetics

Recording

Wednesday, February 3

1:00 PM → 7:00 PM Afternoon

1:30 PM Erik van Nimwegen - Recombination with complex population structure drives genome evolution in many bacterial species

Recording

2:00 PM Olivier Rivoire - Models of coevolution in proteins: sampling, physics and evolution

Recording

2:30 PM Clément Nizak - Parameters and determinants of responses to selection in antibody libraries

Recording

4:00 PM Samir Suweis - Constrained proteome allocation, adaptive strategies, and coexistence in models of competitive microbial communities

Recording

4:30 PM Simona Cocco - The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2

Recording

5:00 PM Ada Altieri - New perspectives on the emergence of multiple equilibria in large highly interacting ecosystems

Recording

5:30 PM Rosalind Allen - Modelling phenotypic delay in the evolution of bacterial antibiotic resistance

Recording

Thursday, February 4

1:00 PM → 7:00 PM Afternoon

1:30 PM Amaury Lambert - The genomic view of diversification

Recording

2:00 PM Eduardo Rocha - Gene flow, innovation and the invention of microbial functions

Recording

2:30 PM Benny Chain - Capturing T cell receptor similarities

Recording

4:00 PM Martin Weigt - Wandering through sequence space

Recording

4:30 PM Michael Desai - Evolution as a stochastic algorithm

Recording

5:00 PM Alison Feder - Inferring spatially-embedded genealogies in expanding populations

5:30 PM Daniel Weinreich - A high-throughput approach to study epistasis in proteins

Recording

Friday, February 5

1:00 PM → 7:00 PM Afternoon

1:30 PM Joachim Krug - Evolutionary pathways to antibiotic resistance

Recording

2:00 PM Matteo Smerlak - The retrospective view of molecular evolution

Recording

2:30 PM Namiko Mitarai - Bacteria and Phage: Competition and Coexistence

Recording

4:00 PM Thierry Mora - Solitary waves in virus-host co-evolution

Recording

4:30 PM Marta Luksza - Cancer evolution and metastasis under immune selection

Recording

5:00 PM Sarah Cobey - Vaccination and adaptive evolution of SARS-CoV-2