Phylogeny and inference: from models to data and back

1 févr. 2021, 09:00 → 5 févr. 2021, 19:00 Europe/Paris

Amphithéâtre Hermite (Institut Henri Poincaré)

Click here for the program

Organizers:
Anne-Florence Bitbol (EPFL)
Claude Loverdo (CNRS & Sorbonne Université)
Mikhail Tikhonov (Washington University St Louis)
Aleksandra Walczak (CNRS & ENS)

lundi 1 février ¶

13:00 → 19:00 Afternoon¶

13:55 Introduction

14:00 Samuel Alizon - ABC phylodynamics¶

Recording

14:30 Rémi Monasson - Infer global, predict local: on the trade-off between statistical models and sequence data for protein fitness reconstruction¶

Recording

16:00 Stéphane Guindon - Bayesian phylogeography along a continuum: sampling its way in a random walk¶

Recording

16:30 Christophe Dessimoz - Laying foundations for very large scale comparative genomics¶

Recording

17:00 Tandy Warnow - New methods for large-scale species tree estimation addressing GDL¶

Recording

17:30 Katia Koelle - Tree-free phylodynamic inference for emerging viral pathogens and lineages¶

Recording

mardi 2 février ¶

08:00 → 12:00 Morning¶

09:00 Chikara Furusawa - Toward prediction and control of microbial evolution: Analysis of phenotypic constraints in laboratory evolution¶

Recording

09:30 François Blanquart - Evolution of virulence in commensal bacteria: example of the High Pathogenicity Island in Escherichia coli¶

Recording

10:00 Guillaume Achaz - What process(es) explain(s) genetic diversity within species?¶

Recording

13:00 → 19:00 Afternoon¶

16:00 Alessandra Carbone - Inferring phylogeny and function from different sequence spaces¶

Recording

16:30 Daniel Weissman - Evolution in spatially structured populations¶

Recording

17:00 KC Huang - Bacterial evolution in complex environments¶

Recording

17:30 Chris Illingworth - Sequencing error and phylogenetics¶

Recording

mercredi 3 février ¶

13:00 → 19:00 Afternoon¶

13:30 Erik van Nimwegen - Recombination with complex population structure drives genome evolution in many bacterial species¶

Recording

14:00 Olivier Rivoire - Models of coevolution in proteins: sampling, physics and evolution¶

Recording

14:30 Clément Nizak - Parameters and determinants of responses to selection in antibody libraries¶

Recording

16:00 Samir Suweis - Constrained proteome allocation, adaptive strategies, and coexistence in models of competitive microbial communities¶

Recording

16:30 Simona Cocco - The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2¶

Recording

17:00 Ada Altieri - New perspectives on the emergence of multiple equilibria in large highly interacting ecosystems¶

Recording

17:30 Rosalind Allen - Modelling phenotypic delay in the evolution of bacterial antibiotic resistance¶

Recording

jeudi 4 février ¶

13:00 → 19:00 Afternoon¶

13:30 Amaury Lambert - The genomic view of diversification¶

Recording

14:00 Eduardo Rocha - Gene flow, innovation and the invention of microbial functions¶

Recording

14:30 Benny Chain - Capturing T cell receptor similarities¶

Recording

16:00 Martin Weigt - Wandering through sequence space¶

Recording

16:30 Michael Desai - Evolution as a stochastic algorithm¶

Recording

17:00 Alison Feder - Inferring spatially-embedded genealogies in expanding populations¶

17:30 Daniel Weinreich - A high-throughput approach to study epistasis in proteins¶

Recording

vendredi 5 février ¶

13:00 → 19:00 Afternoon¶

13:30 Joachim Krug - Evolutionary pathways to antibiotic resistance¶

Recording

14:00 Matteo Smerlak - The retrospective view of molecular evolution¶

Recording

14:30 Namiko Mitarai - Bacteria and Phage: Competition and Coexistence¶

Recording

16:00 Thierry Mora - Solitary waves in virus-host co-evolution¶

Recording

16:30 Marta Luksza - Cancer evolution and metastasis under immune selection¶

Recording

17:00 Sarah Cobey - Vaccination and adaptive evolution of SARS-CoV-2¶