Phylogeny and inference: from models to data and back

Europe/Paris
Amphithéâtre Hermite (Institut Henri Poincaré)

Amphithéâtre Hermite

Institut Henri Poincaré

11 rue Pierre et Marie Curie 75005 Paris
Description

Click here for the program

Organizers:
Anne-Florence Bitbol (EPFL)
Claude Loverdo (CNRS & Sorbonne Université)
Mikhail Tikhonov (Washington University St Louis)
Aleksandra Walczak (CNRS & ENS)

    • 13:00 19:00
      Afternoon
      • 13:55
        Introduction 5m
      • 14:00
        Samuel Alizon - ABC phylodynamics 30m
      • 14:30
        Rémi Monasson - Infer global, predict local: on the trade-off between statistical models and sequence data for protein fitness reconstruction 30m
      • 16:00
        Stéphane Guindon - Bayesian phylogeography along a continuum: sampling its way in a random walk 30m
      • 16:30
        Christophe Dessimoz - Laying foundations for very large scale comparative genomics 30m
      • 17:00
        Tandy Warnow - New methods for large-scale species tree estimation addressing GDL 30m
      • 17:30
        Katia Koelle - Tree-free phylodynamic inference for emerging viral pathogens and lineages 30m
    • 08:00 12:00
      Morning
      • 09:00
        Chikara Furusawa - Toward prediction and control of microbial evolution: Analysis of phenotypic constraints in laboratory evolution 30m
      • 09:30
        François Blanquart - Evolution of virulence in commensal bacteria: example of the High Pathogenicity Island in Escherichia coli 30m
      • 10:00
        Guillaume Achaz - What process(es) explain(s) genetic diversity within species? 30m
    • 13:00 19:00
      Afternoon
      • 16:00
        Alessandra Carbone - Inferring phylogeny and function from different sequence spaces 30m
      • 16:30
        Daniel Weissman - Evolution in spatially structured populations 30m
      • 17:00
        KC Huang - Bacterial evolution in complex environments 30m
      • 17:30
        Chris Illingworth - Sequencing error and phylogenetics 30m
    • 13:00 19:00
      Afternoon
      • 13:30
        Erik van Nimwegen - Recombination with complex population structure drives genome evolution in many bacterial species 30m
      • 14:00
        Olivier Rivoire - Models of coevolution in proteins: sampling, physics and evolution 30m
      • 14:30
        Clément Nizak - Parameters and determinants of responses to selection in antibody libraries 30m
      • 16:00
        Samir Suweis - Constrained proteome allocation, adaptive strategies, and coexistence in models of competitive microbial communities 30m
      • 16:30
        Simona Cocco - The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2 30m
      • 17:00
        Ada Altieri - New perspectives on the emergence of multiple equilibria in large highly interacting ecosystems 30m
      • 17:30
        Rosalind Allen - Modelling phenotypic delay in the evolution of bacterial antibiotic resistance 30m
    • 13:00 19:00
      Afternoon
      • 13:30
        Amaury Lambert - The genomic view of diversification 30m
      • 14:00
        Eduardo Rocha - Gene flow, innovation and the invention of microbial functions 30m
      • 14:30
        Benny Chain - Capturing T cell receptor similarities 30m
      • 16:00
        Martin Weigt - Wandering through sequence space 30m
      • 16:30
        Michael Desai - Evolution as a stochastic algorithm 30m
      • 17:00
        Alison Feder - Inferring spatially-embedded genealogies in expanding populations 30m
      • 17:30
        Daniel Weinreich - A high-throughput approach to study epistasis in proteins 30m
    • 13:00 19:00
      Afternoon
      • 13:30
        Joachim Krug - Evolutionary pathways to antibiotic resistance 30m
      • 14:00
        Matteo Smerlak - The retrospective view of molecular evolution 30m
      • 14:30
        Namiko Mitarai - Bacteria and Phage: Competition and Coexistence 30m
      • 16:00
        Thierry Mora - Solitary waves in virus-host co-evolution 30m
      • 16:30
        Marta Luksza - Cancer evolution and metastasis under immune selection 30m
      • 17:00
        Sarah Cobey - Vaccination and adaptive evolution of SARS-CoV-2 30m