Name: Phylogeny and inference: from models to data and back
Start: 2021-02-01T09:00:00+01:00
End: 2021-02-05T19:00:00+01:00
Location: Institut Henri Poincaré

Phylogeny and inference: from models to data and back

from Monday, February 1, 2021 (9:00 AM) to Friday, February 5, 2021 (7:00 PM)

Monday, February 1, 2021
1:00 PM
1:00 PM - 7:00 PM
Room: Amphithéâtre Hermite
Contributions

2:00 PM Samuel Alizon - ABC phylodynamics

2:30 PM Rémi Monasson - Infer global, predict local: on the trade-off between statistical models and sequence data for protein fitness reconstruction

4:00 PM Stéphane Guindon - Bayesian phylogeography along a continuum: sampling its way in a random walk

4:30 PM Christophe Dessimoz - Laying foundations for very large scale comparative genomics

5:00 PM Tandy Warnow - New methods for large-scale species tree estimation addressing GDL

5:30 PM Katia Koelle - Tree-free phylodynamic inference for emerging viral pathogens and lineages
Tuesday, February 2, 2021
8:00 AM
8:00 AM - 12:00 PM
Room: Amphithéâtre Hermite
Contributions

9:00 AM Chikara Furusawa - Toward prediction and control of microbial evolution: Analysis of phenotypic constraints in laboratory evolution

9:30 AM François Blanquart - Evolution of virulence in commensal bacteria: example of the High Pathogenicity Island in Escherichia coli

10:00 AM Guillaume Achaz - What process(es) explain(s) genetic diversity within species?
1:00 PM
1:00 PM - 7:00 PM
Room: Amphithéâtre Hermite
Contributions

4:00 PM Alessandra Carbone - Inferring phylogeny and function from different sequence spaces

4:30 PM Daniel Weissman - Evolution in spatially structured populations

5:00 PM KC Huang - Bacterial evolution in complex environments

5:30 PM Chris Illingworth - Sequencing error and phylogenetics
Wednesday, February 3, 2021
1:00 PM
1:00 PM - 7:00 PM
Room: Amphithéâtre Hermite
Contributions

1:30 PM Erik van Nimwegen - Recombination with complex population structure drives genome evolution in many bacterial species

2:00 PM Olivier Rivoire - Models of coevolution in proteins: sampling, physics and evolution

2:30 PM Clément Nizak - Parameters and determinants of responses to selection in antibody libraries

4:00 PM Samir Suweis - Constrained proteome allocation, adaptive strategies, and coexistence in models of competitive microbial communities

4:30 PM Simona Cocco - The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2

5:00 PM Ada Altieri - New perspectives on the emergence of multiple equilibria in large highly interacting ecosystems

5:30 PM Rosalind Allen - Modelling phenotypic delay in the evolution of bacterial antibiotic resistance
Thursday, February 4, 2021
1:00 PM
1:00 PM - 7:00 PM
Room: Amphithéâtre Hermite
Contributions

1:30 PM Amaury Lambert - The genomic view of diversification

2:00 PM Eduardo Rocha - Gene flow, innovation and the invention of microbial functions

2:30 PM Benny Chain - Capturing T cell receptor similarities

4:00 PM Martin Weigt - Wandering through sequence space

4:30 PM Michael Desai - Evolution as a stochastic algorithm

5:00 PM Alison Feder - Inferring spatially-embedded genealogies in expanding populations

5:30 PM Daniel Weinreich - A high-throughput approach to study epistasis in proteins
Friday, February 5, 2021
1:00 PM
1:00 PM - 7:00 PM
Room: Amphithéâtre Hermite
Contributions

1:30 PM Joachim Krug - Evolutionary pathways to antibiotic resistance

2:00 PM Matteo Smerlak - The retrospective view of molecular evolution

2:30 PM Namiko Mitarai - Bacteria and Phage: Competition and Coexistence

4:00 PM Thierry Mora - Solitary waves in virus-host co-evolution

4:30 PM Marta Luksza - Cancer evolution and metastasis under immune selection

5:00 PM Sarah Cobey - Vaccination and adaptive evolution of SARS-CoV-2

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