Phylogeny and inference: from models to data and back

1 févr. 2021, 09:00 → 5 févr. 2021, 19:00 Europe/Paris

Amphithéâtre Hermite (Institut Henri Poincaré)

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Organizers:
Anne-Florence Bitbol (EPFL)
Claude Loverdo (CNRS & Sorbonne Université)
Mikhail Tikhonov (Washington University St Louis)
Aleksandra Walczak (CNRS & ENS)

lundi 1 février

Afternoon

13:55 Introduction

1 Samuel Alizon - ABC phylodynamics

Recording

2 Rémi Monasson - Infer global, predict local: on the trade-off between statistical models and sequence data for protein fitness reconstruction

Recording

3 Stéphane Guindon - Bayesian phylogeography along a continuum: sampling its way in a random walk

Recording

4 Christophe Dessimoz - Laying foundations for very large scale comparative genomics

Recording

5 Tandy Warnow - New methods for large-scale species tree estimation addressing GDL

Recording

6 Katia Koelle - Tree-free phylodynamic inference for emerging viral pathogens and lineages

Recording

mardi 2 février

Morning

7 Chikara Furusawa - Toward prediction and control of microbial evolution: Analysis of phenotypic constraints in laboratory evolution

Recording

8 François Blanquart - Evolution of virulence in commensal bacteria: example of the High Pathogenicity Island in Escherichia coli

Recording

9 Guillaume Achaz - What process(es) explain(s) genetic diversity within species?

Recording

Afternoon

10 Alessandra Carbone - Inferring phylogeny and function from different sequence spaces

Recording

11 Daniel Weissman - Evolution in spatially structured populations

Recording

12 KC Huang - Bacterial evolution in complex environments

Recording

13 Chris Illingworth - Sequencing error and phylogenetics

Recording

mercredi 3 février

Afternoon

14 Erik van Nimwegen - Recombination with complex population structure drives genome evolution in many bacterial species

Recording

15 Olivier Rivoire - Models of coevolution in proteins: sampling, physics and evolution

Recording

16 Clément Nizak - Parameters and determinants of responses to selection in antibody libraries

Recording

17 Samir Suweis - Constrained proteome allocation, adaptive strategies, and coexistence in models of competitive microbial communities

Recording

18 Simona Cocco - The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2

Recording

19 Ada Altieri - New perspectives on the emergence of multiple equilibria in large highly interacting ecosystems

Recording

20 Rosalind Allen - Modelling phenotypic delay in the evolution of bacterial antibiotic resistance

Recording

jeudi 4 février

Afternoon

21 Amaury Lambert - The genomic view of diversification

Recording

22 Eduardo Rocha - Gene flow, innovation and the invention of microbial functions

Recording

23 Benny Chain - Capturing T cell receptor similarities

Recording

24 Martin Weigt - Wandering through sequence space

Recording

25 Michael Desai - Evolution as a stochastic algorithm

Recording

26 Alison Feder - Inferring spatially-embedded genealogies in expanding populations

27 Daniel Weinreich - A high-throughput approach to study epistasis in proteins

Recording

vendredi 5 février

Afternoon

28 Joachim Krug - Evolutionary pathways to antibiotic resistance

Recording

29 Matteo Smerlak - The retrospective view of molecular evolution

Recording

30 Namiko Mitarai - Bacteria and Phage: Competition and Coexistence

Recording

31 Thierry Mora - Solitary waves in virus-host co-evolution

Recording

32 Marta Luksza - Cancer evolution and metastasis under immune selection

Recording

33 Sarah Cobey - Vaccination and adaptive evolution of SARS-CoV-2