Phylogeny and inference: from models to data and back

Liste des Contributions

1. Samuel Alizon - ABC phylodynamics

01/02/2021 14:00

Afternoon

2. Rémi Monasson - Infer global, predict local: on the trade-off between statistical models and sequence data for protein fitness reconstruction

01/02/2021 14:30

Afternoon

3. Stéphane Guindon - Bayesian phylogeography along a continuum: sampling its way in a random walk

01/02/2021 16:00

Afternoon

4. Christophe Dessimoz - Laying foundations for very large scale comparative genomics

01/02/2021 16:30

Afternoon

5. Tandy Warnow - New methods for large-scale species tree estimation addressing GDL

01/02/2021 17:00

Afternoon

6. Katia Koelle - Tree-free phylodynamic inference for emerging viral pathogens and lineages

01/02/2021 17:30

Afternoon

7. Chikara Furusawa - Toward prediction and control of microbial evolution: Analysis of phenotypic constraints in laboratory evolution

02/02/2021 09:00

Morning

8. François Blanquart - Evolution of virulence in commensal bacteria: example of the High Pathogenicity Island in Escherichia coli

02/02/2021 09:30

Morning

9. Guillaume Achaz - What process(es) explain(s) genetic diversity within species?

02/02/2021 10:00

Morning

10. Alessandra Carbone - Inferring phylogeny and function from different sequence spaces

02/02/2021 16:00

Afternoon

11. Daniel Weissman - Evolution in spatially structured populations

02/02/2021 16:30

Afternoon

12. KC Huang - Bacterial evolution in complex environments

02/02/2021 17:00

Afternoon

13. Chris Illingworth - Sequencing error and phylogenetics

02/02/2021 17:30

Afternoon

14. Erik van Nimwegen - Recombination with complex population structure drives genome evolution in many bacterial species

03/02/2021 13:30

Afternoon

15. Olivier Rivoire - Models of coevolution in proteins: sampling, physics and evolution

03/02/2021 14:00

Afternoon

16. Clément Nizak - Parameters and determinants of responses to selection in antibody libraries

03/02/2021 14:30

Afternoon

17. Samir Suweis - Constrained proteome allocation, adaptive strategies, and coexistence in models of competitive microbial communities

03/02/2021 16:00

Afternoon

18. Simona Cocco - The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2

03/02/2021 16:30

Afternoon

19. Ada Altieri - New perspectives on the emergence of multiple equilibria in large highly interacting ecosystems

03/02/2021 17:00

Afternoon

20. Rosalind Allen - Modelling phenotypic delay in the evolution of bacterial antibiotic resistance

03/02/2021 17:30

Afternoon

21. Amaury Lambert - The genomic view of diversification

04/02/2021 13:30

Afternoon

22. Eduardo Rocha - Gene flow, innovation and the invention of microbial functions

04/02/2021 14:00

Afternoon

23. Benny Chain - Capturing T cell receptor similarities

04/02/2021 14:30

Afternoon

24. Martin Weigt - Wandering through sequence space

04/02/2021 16:00

Afternoon

25. Michael Desai - Evolution as a stochastic algorithm

04/02/2021 16:30

Afternoon

26. Alison Feder - Inferring spatially-embedded genealogies in expanding populations

04/02/2021 17:00

Afternoon

27. Daniel Weinreich - A high-throughput approach to study epistasis in proteins

04/02/2021 17:30

Afternoon

28. Joachim Krug - Evolutionary pathways to antibiotic resistance

05/02/2021 13:30

Afternoon

29. Matteo Smerlak - The retrospective view of molecular evolution

05/02/2021 14:00

Afternoon

30. Namiko Mitarai - Bacteria and Phage: Competition and Coexistence

05/02/2021 14:30

Afternoon

31. Thierry Mora - Solitary waves in virus-host co-evolution

05/02/2021 16:00

Afternoon

32. Marta Luksza - Cancer evolution and metastasis under immune selection

05/02/2021 16:30

Afternoon

33. Sarah Cobey - Vaccination and adaptive evolution of SARS-CoV-2

05/02/2021 17:00

Afternoon

34. Pedagogical tutorial by Martin Weigt: "1) aligning two sequences"; "2) sequence profiles and hidden Markov models"