A Diagram Representation of Interactions of Modules in Biological Molecules
(Research Center for Advanced Science and Technology & the Institute of Biology and Mathematics for Dynamics Cellular Processes (iBMath), University of Tokyo)
Amphithéâtre Léon Motchane (IHES)
Amphithéâtre Léon Motchane
35, route de Chartres
After overviewing the representation of biological molecules, I introduce the representation of interactions between modules in the proteins with the SO(3) rotation of the peptide unit introduced by Penner et al.. Using protein data in PDB, I will show our representation with the SO(3) rotation is useful in characterizing the structure and its change due to the mutation or the native dynamical change with time. I also discuss some possible potential extensions of our approach to the chromatin structure.