Name: Phylogeny and inference: from models to data and back
Start: 2021-02-01T09:00:00+01:00
End: 2021-02-05T19:00:00+01:00
Location: Institut Henri Poincaré

Phylogeny and inference: from models to data and back

de lundi 1 février 2021 (09:00) à vendredi 5 février 2021 (19:00)

lundi 1 février 2021
13:00
13:00 - 19:00
Room: Amphithéâtre Hermite
Contributions

14:00 Samuel Alizon - ABC phylodynamics

14:30 Rémi Monasson - Infer global, predict local: on the trade-off between statistical models and sequence data for protein fitness reconstruction

16:00 Stéphane Guindon - Bayesian phylogeography along a continuum: sampling its way in a random walk

16:30 Christophe Dessimoz - Laying foundations for very large scale comparative genomics

17:00 Tandy Warnow - New methods for large-scale species tree estimation addressing GDL

17:30 Katia Koelle - Tree-free phylodynamic inference for emerging viral pathogens and lineages
mardi 2 février 2021
08:00
08:00 - 12:00
Room: Amphithéâtre Hermite
Contributions

09:00 Chikara Furusawa - Toward prediction and control of microbial evolution: Analysis of phenotypic constraints in laboratory evolution

09:30 François Blanquart - Evolution of virulence in commensal bacteria: example of the High Pathogenicity Island in Escherichia coli

10:00 Guillaume Achaz - What process(es) explain(s) genetic diversity within species?
13:00
13:00 - 19:00
Room: Amphithéâtre Hermite
Contributions

16:00 Alessandra Carbone - Inferring phylogeny and function from different sequence spaces

16:30 Daniel Weissman - Evolution in spatially structured populations

17:00 KC Huang - Bacterial evolution in complex environments

17:30 Chris Illingworth - Sequencing error and phylogenetics
mercredi 3 février 2021
13:00
13:00 - 19:00
Room: Amphithéâtre Hermite
Contributions

13:30 Erik van Nimwegen - Recombination with complex population structure drives genome evolution in many bacterial species

14:00 Olivier Rivoire - Models of coevolution in proteins: sampling, physics and evolution

14:30 Clément Nizak - Parameters and determinants of responses to selection in antibody libraries

16:00 Samir Suweis - Constrained proteome allocation, adaptive strategies, and coexistence in models of competitive microbial communities

16:30 Simona Cocco - The heterogeneous landscape and early evolution of pathogen-associated CpG dinucleotides in SARS-CoV-2

17:00 Ada Altieri - New perspectives on the emergence of multiple equilibria in large highly interacting ecosystems

17:30 Rosalind Allen - Modelling phenotypic delay in the evolution of bacterial antibiotic resistance
jeudi 4 février 2021
13:00
13:00 - 19:00
Room: Amphithéâtre Hermite
Contributions

13:30 Amaury Lambert - The genomic view of diversification

14:00 Eduardo Rocha - Gene flow, innovation and the invention of microbial functions

14:30 Benny Chain - Capturing T cell receptor similarities

16:00 Martin Weigt - Wandering through sequence space

16:30 Michael Desai - Evolution as a stochastic algorithm

17:00 Alison Feder - Inferring spatially-embedded genealogies in expanding populations

17:30 Daniel Weinreich - A high-throughput approach to study epistasis in proteins
vendredi 5 février 2021
13:00
13:00 - 19:00
Room: Amphithéâtre Hermite
Contributions

13:30 Joachim Krug - Evolutionary pathways to antibiotic resistance

14:00 Matteo Smerlak - The retrospective view of molecular evolution

14:30 Namiko Mitarai - Bacteria and Phage: Competition and Coexistence

16:00 Thierry Mora - Solitary waves in virus-host co-evolution

16:30 Marta Luksza - Cancer evolution and metastasis under immune selection

17:00 Sarah Cobey - Vaccination and adaptive evolution of SARS-CoV-2